Listar por tema "whole genome sequencing"

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  • Complete genome sequence of bartonella bacilliformis strain KC584 (ATCC 35686) 
    Dichter, Alexander A.; Schultze, Tilman G.; Becker, Sabrina A.; Tsukayama Cisneros, Pablo; Kempf, Volkhard A. J. (American Society for Microbiology, 2020)
    Bartonella bacilliformis is the biological agent of Carrion's disease, a vector-borne, life-threatening human bartonellosis restricted to South America. Here, we report the complete genome sequence of B. bacilliformis KC584 ...
  • Detection of heterogeneous vancomycin intermediate resistance in MRSA isolates from Latin America 
    Castro, Betsy E.; Berrio, Maritza; Vargas, Monica L.; Carvajal, Lina P.; Millan, Lina V.; Rios, Rafael; Hernandez, Angie K.; Rincon, Sandra; Cubides, Paola; Forero, Erika; Dinh, An; Seas Ramos, Carlos Rafael; Munita, Jose M.; Arias, Cesar A.; Reyes, Jinnethe; Diaz, Lorena (Oxford University Press, 2020)
    BACKGROUND: Vancomycin is a common first-line option for MRSA infections. The heterogeneous vancomycin-intermediate Staphylococcus aureus (hVISA) phenotype is associated with therapeutic failure. However, hVISA isolates ...
  • Exportation of MDR TB to europe from setting with actively transmitted persistent strains in peru 
    Acosta, F.; Agapito, J.; Cabibbe, A.M.; Cáceres Nakiche, Tatiana; Sola, C.; Pérez-Lago, L.; Abascal, E.; Herranz, M.; Meza, E.; Klotoe, B.; Muñoz, P.; Rossolini, G.M.; Bartoloni, A.; Tortoli, E.; Cirillo, D.M.; Gotuzzo Herencia, José Eduardo; García De Viedma, D. (Centers for Disease Control and Prevention, 2019)
    We performed a cross-border molecular epidemiology analysis of multidrug-resistant tuberculosis in Peru, Spain, and Italy. This analysis revealed frequent transmission in Peru and exportation of a strain that recreated ...
  • Identification of Main Genetic Causes Responsible for Non-Syndromic Hearing Loss in a Peruvian Population 
    Figueroa Ildefonso, Erick Gianpierre; Bademci, Guney; Rajabli, Farid; Cornejo-Olivas, Mario; Villanueva, Ruy Diego Chacon; Badillo-Carrillo, Rodolfo; Inca-Martinez, Miguel; Neyra, Karina Milla; Sineni, Claire; Tekin, Mustafa (MDPI, 2019)
    Hearing loss (HL) is a common sensory disorder affecting over 5% of the global population. The etiology underlying HL includes congenital and acquired causes; genetic factors are the main cause in over 50% of congenital ...
  • International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact 
    Gladstone, Rebecca A.; Lo, Stephanie W.; Lees, John A.; Croucher, Nicholas J.; van Tonder, Andries J.; Corander, Jukka; Page, Andrew J.; Marttinen, Pekka; Bentley, Leon J.; Ochoa Woodell, Theresa Jean; Ho, Pak Leung; du Plessis, Mignon; Cornick, Jennifer E.; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A.; Madhi, Shabir A.; Hawkins, Paulina A.; Everett, Dean B.; Antonio, Martin; Dagan, Ron; Klugman, Keith P.; von Gottberg, Anne; McGee, Lesley; Breiman, Robert F.; Bentley, Stephen D. (Elsevier, 2019)
    Background: Pneumococcal conjugate vaccines have reduced the incidence of invasive pneumococcal disease, caused by vaccine serotypes, but non-vaccine-serotypes remain a concern. We used whole genome sequencing to study ...
  • Sexual reproduction in a natural Trypanosoma cruzi population 
    Berry, Alexander S. F.; Salazar Sánchez, Renzo Sadath; Castillo Neyra, Ricardo; Borrini-Mayori, Katty; Chipana-Ramos, Claudia; Vargas-Maquera, Melina; Ancca-Juarez, Jenny; Naquira Velarde, Cesar Gabriel; Levy, Michael Z.; Brisson, Dustin (Public Library of Science, 2019)
    Background: Sexual reproduction provides an evolutionary advantageous mechanism that combines favorable mutations that have arisen in separate lineages into the same individual. This advantage is especially pronounced in ...
  • Tracing the Distribution of European Lactase Persistence Genotypes Along the Americas 
    Guimarães Alves, A.C.; Sukow, N.M.; Adelman Cipolla, G.; Mendes, M.; Leal, T.P.; Petzl-Erler, M.L.; Lehtonen Rodrigues Souza, R.; Rainha de Souza, I.; Sanchez, C.; Santolalla Robles, Meddly Leslye; Loesch, D.; Dean, M.; Machado, M.; Moon, J.-Y.; Kaplan, R.; North, K.E.; Weiss, S.; Barreto, M.L.; Lima-Costa, M.F.; Guio, H.; Cáceres, O.; Padilla, C.; Tarazona-Santos, E.; Mata, I.F.; Dieguez, E.; Raggio, V.; Lescano, Andrés; Tumas, V.; Borges, V.; Ferraz, H.B.; Rieder, C.R.; Schumacher-Schuh, A.; Santos-Lobato, B.L.; Chana-Cuevas, P.; Fernandez, W.; Arboleda, G.; Arboleda, H.; Arboleda-Bustos, C.E.; O’Connor, T.D.; Beltrame, M.H.; Borda, V. (Frontiers Media, 2021)
    In adulthood, the ability to digest lactose, the main sugar present in milk of mammals, is a phenotype (lactase persistence) observed in historically herder populations, mainly Northern Europeans, Eastern Africans, and ...
  • Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates 
    Gladstone, Rebecca A.; Lo, Stephanie W.; Goater, Richard; Yeats, Corin; Taylor, Ben; Hadfield, James; Lees, John A.; Croucher, Nicholas J.; van Tonder, Andries J.; Bentley, Leon J.; Quah, Fu Xiang; Blaschke, Anne J.; Pershing, Nicole L.; Byington, Carrie L.; Balaji, Veeraraghavan; Hryniewicz, Waleria; Sigauque, Betuel; Ravikumar, K. L.; Grassi Almeida, Samanta Cristine; Ochoa Woodell, Theresa Jean; Ho, Pak Leung; du Plessis, Mignon; Ndlangisa, Kedibone M.; Cornick, Jennifer E.; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A.; Madhi, Shabir A.; Hawkins, Paulina A.; Pollard, Andrew J.; Everett, Dean B.; Antonio, Martin; Dagan, Ron; Klugman, Keith P.; von Gottberg, Anne; Metcalf, Benjamin J.; Li, Yuan; Beall, Bernard W.; McGee, Lesley; Breiman, Robert F.; Aanensen, David M.; Bentley, Stephen D.; The Global Pneumococcal Sequencing Consortium (Microbiology Society, 2020)
    Knowledge of pneumococcal lineages, their geographic distribution and antibiotic resistance patterns, can give insights into global pneumococcal disease. We provide interactive bioinformatic outputs to explore such topics, ...
  • Whole-Genome Characterisation of ESBL-Producing E. coli Isolated from Drinking Water and Dog Faeces from Rural Andean Households in Peru 
    Medina-Pizzali, Maria Luisa; Venkatesh, A.; Riveros Ramirez, Maribel Denise; Cuicapuza, Diego; Salmon-Mulanovich, Gabriela; Mäusezahl, Daniel; Hartinger Peña, Stella Maria (MDPI, 2022)
    E. coli that produce extended-spectrum β-lactamases (ESBLs) are major multidrug-resistant bacteria. In Peru, only a few reports have characterised the whole genome of ESBL enterobacteria. We aimed to confirm the identity ...
  • Whole-genome sequencing of a salmonella enterica subsp. Enterica serovar infantis strain isolated from broiler chicken in Peru 
    Vallejos-Sanchez, Katherine; Tataje-Lavanda, Luis; Villanueva-Perez, Doris; Bendezu, Jorge; Montalvan, Angela; Zimic-Peralta, Mirko Juan; Fernandez-Sanchez, Manolo; Fernandez-Diaz, Manolo (American Society for Microbiology, 2019)
    This report shows the whole-genome sequence of the multidrug-resistant Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219. Antibiotic resistance genes are found mainly in the plasmid. Our findings show ...

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