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Foliar transcriptomes reveal candidate genes for late blight resistance in cultivars of diploid potato Solanum tuberosum L. Andigenum Group

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dc.contributor.author De la Cruz, Germán
dc.contributor.author Blas, Raúl
dc.contributor.author Pérez, Willmer
dc.contributor.author Neyra Valdez, Lidio Edgar
dc.contributor.author Ortiz, Rodomiro
dc.date.accessioned 2023-10-12T15:30:08Z
dc.date.available 2023-10-12T15:30:08Z
dc.date.issued 2023
dc.identifier.uri https://hdl.handle.net/20.500.12866/14281
dc.description.abstract Characterization of major resistance (R) genes to late blight (LB) –caused by the oomycete Phytophthora infestans– is very important for potato breeding. The objective of this study was to identify novel genes for resistance to LB from diploid Solanum tuberosum L. Andigenum Group (StAG) cultivar accessions. Using comparative analysis with a edgeR bioconductor package for differential expression analysis of transcriptomes, two of these accessions with contrasting levels of resistance to LB were analyzed using digital gene expression data. As a result, various differentially expressed genes (P ≤ 0.0001, Log2FC ≥ 2, FDR < 0.001) were noted. The combination of transcriptomic analysis provided 303 candidate genes that are overexpressed and underexpressed, thereby giving high resistance to LB. The functional analysis showed differential expression of R genes and their corresponding proteins related to disease resistance, NBS-LRR domain proteins, and specific disease resistance proteins. Comparative analysis of specific tissue transcriptomes in resistant and susceptible genotypes can be used for rapidly identifying candidate R genes, thus adding novel genes from diploid StAG cultivar accessions for host plant resistance to P. infestans in potato. en_US
dc.language.iso eng
dc.publisher Frontiers
dc.relation.ispartofseries Frontiers in Plant Science
dc.rights info:eu-repo/semantics/restrictedAccess
dc.rights.uri https://creativecommons.org/licenses/by-nc-nd/4.0/deed.es
dc.subject Gene expression en_US
dc.subject Genome en_US
dc.subject Host plant resistance en_US
dc.subject Phytophthora infestans en_US
dc.subject Solanum tuberosum en_US
dc.subject.mesh Expresión Génica
dc.subject.mesh Genoma
dc.subject.mesh Defensa de la Planta contra la Herbivoria
dc.subject.mesh Phytophthora infestans
dc.subject.mesh Solanum tuberosum
dc.title Foliar transcriptomes reveal candidate genes for late blight resistance in cultivars of diploid potato Solanum tuberosum L. Andigenum Group en_US
dc.type info:eu-repo/semantics/article
dc.identifier.doi https://doi.org/10.3389/fpls.2023.1210046
dc.relation.issn 1664-462X


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