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Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment

Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment

Shaffer, John R.; Li, Jinxi; Lee, Myoung Keun; Roosenboom, Jasmien; Orlova, Ekaterina; Adhikari, Kaustabh; 23andMe Research Team; Gallo López-Aliaga, Carla Maria; Poletti, Giovanni; Schuler-Faccini, Lavinia; Bortolini, Maria-Cátira; Canizales-Quinteros, Samuel; Rothhammer, Francisco; Bedoya, Gabriel; González-José, Rolando; Pfeffer, Paige E.; Wollenschlaeger, Christopher A.; Hecht, Jacqueline T.; Wehby, George L.; Moreno, Lina M.; Ding, Anan; Jin, Li; Yang, Yajun; Carlson, Jenna C.; Leslie, Elizabeth J.; Feingold, Eleanor; Marazita, Mary L.; Hinds, David A.; Cox, Timothy C.; Wang, Sijia; Ruiz-Linares, Andrés; Weinberg, Seth M.
URI: https://hdl.handle.net/20.500.12866/4708
Date: 2017

Abstract:

The genetic basis of earlobe attachment has been a matter of debate since the early 20th century, such that geneticists argue both for and against polygenic inheritance. Recent genetic studies have identified a few loci associated with the trait, but large-scale analyses are still lacking. Here, we performed a genome-wide association study of lobe attachment in a multiethnic sample of 74,660 individuals from four cohorts (three with the trait scored by an expert rater and one with the trait self-reported). Meta-analysis of the three expert-rater-scored cohorts revealed six associated loci harboring numerous candidate genes, including EDAR, SP5, MRPS22, ADGRG6 (GPR126), KIAA1217, and PAX9. The large self-reported 23andMe cohort recapitulated each of these six loci. Moreover, meta-analysis across all four cohorts revealed a total of 49 significant (p < 5 × 10-8) loci. Annotation and enrichment analyses of these 49 loci showed strong evidence of genes involved in ear development and syndromes with auricular phenotypes. RNA sequencing data from both human fetal ear and mouse second branchial arch tissue confirmed that genes located among associated loci showed evidence of expression. These results provide strong evidence for the polygenic nature of earlobe attachment and offer insights into the biological basis of normal and abnormal ear development.

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